Results for "pe"
Blogs
Run bash script in Perl program !
...include, making it easier to perform different functions. Des...f 'alienomics', is written in Perl. Often it's a major problem...tween them. 1. IPC::Open2 More at https://bioinforma...e in the documentation: IPC::Open3. $output = open3(my $o ut,...695 days ago
Ancient whole genome duplication (WGD) detection tools !
...s at each non-synonymous site. At present, some people have posted articles abou...rocess of WGD. I searched for the keyword "wgd pipeline" and found the following:...is a little troublesome to install, because it depends on a lot of software. wgd...1214 days ago
Frequently used bioinformatics tools for viral genome analysis !
...t metagenomic sequence classification using exact alignments. Wood, D. E. & Salzberg, S. L. Genome Biol. 15, R46 (2014). MUMmer: Versatile and open software for comparing large...1105 days ago
Bioinformatics tools for telomere to telomere assembly !
...everages a pangenome reference built from haplotype-resolved genome assemblies in...on from raw, short-read sequencing data to genotype a wide spectrum of genetic va...ing and other low-complexity gene amplicon data; performs allele calling while de...1050 days ago
Levenshtein and Damerau-Levenshtein distance !
...distance It is an extension to Levenshtein Distance, allowing one extra operation: Transposition of...evenshtein distance = 1 (Switching S and T positions cost only one operation) Levenshtein distance...1008 days ago
- ...thout any arguments. Language Download Requirements Perl psiblast.pl LWP and&...e Environment setup for REST Web Services and Examples for Perl REST Web Services Clients&n...
1002 days ago
Basic Structure of Snakemake Pipeline Run !
...ectory is the Snakefile. If you would like to override that you can specify it following the -s...ers for our snakemake file to use. cluster.json = json format file with specification for running on the...992 days ago
Illumina based assembly pipeline steps !
...ration routes (iVar variants and consensus; default for amplicon data || BCFTools, BEDTools; default for metagenomics data) Variant annotation (SnpEff, SnpSift) Consensus assess...935 days ago
Useful Bioinformatics Analysis Tools !
...reads from metagenomic sequencing experiments. • Ka...16):2748–2756, FQSqueezer Experimental high-end compressor o...27(21):2979–2986, GTC Genotype databases compressor with sup...nbsp;2014; 9(10):e109384, ORCOM Experimental compressor of sequenc...922 days ago
- Elgg is an open-source and highly customizable frame...server, choosing Ubuntu 20.04 as the operating system with at least 2G...t, create a data directory and set proper ownership and permissions to...ash; Access Elgg Web Interface Now, open your web browser and access...
770 days ago
