Results for "B"
Blogs
Ancient whole genome duplication (WGD) detection tools !
...ty analysis, and the other is based on the Ks distribution map. Among them, Ks is d...wing: GenoDup: https:// github.com/MaoYafei/GenoDup-Pipeline...s12915-017-0399-xhttps://github.com/dfguan/purge_dupshttps://....gzcd i-adhore-3.0.01mkdir -p build && cd buildcmake...1205 days ago
List of useful machine / ai learning resources !
ML cheatsheet ! https://github.com/remicnrd/ml_cheatsheet Visual AI / ML https://setosa.io/ev/ Simple and efficient tools for predictive data analysis https://scikit-learn.org/stable/1181 days ago
Innovative blog and portfolio website!
...ever feel overwhelmed or frightened by browsing through someone else's beautiful, responsive portfolio website links and wishing you cou...d all the way to the end for a step-by-step guide on creating your...ub.io/#/ https://dalinhuang99.github.io/ http://www.rleonardi.com...1097 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, N...s for amplifying sequencing libraries. Quail, M. a et al. Nat...PC. Deorowicz, S., Debudaj-Grabysz, A. & Grabowski, S. BM..., G. P., Degrave, W. S. & Berriman, M. Nucleic Acids Res....1096 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant call...verages a pangenome reference built from haplotype-resolved g...nscriptome data (Richard Kuo @GenomeRIK)● pbaa ...mic reads to a genome, guided by a database of exon annotatio...1041 days ago
Levenshtein and Damerau-Levenshtein distance !
...so known as Edit Distance, it is the number of transformations (deletions, insertions, or substitutions) required to transf...r example, if the target term is “book” and the source is &...rt the Damerau-Levenshtein distance: Damerau-Levenshtein dista...999 days ago
- REST API The Representational State Transfer (REST) sample clients are provided for a number of programming languages. For deta...to use these clients, download the client and run the prog...nbsp;XML::Simple Python psiblast.py xmltramp2...
993 days ago
Basic Structure of Snakemake Pipeline Run !
...oks for in the current working directory is the Snakefile. If you would lik...override that you can specify it following the -s snakemake -s snakefil...e file as a dry run (the example workflow shown above). This will build a DAG...983 days ago
Classification of SARS-CoV2 Variant !
The scientists established some guidelines for determining whether a variant is a legitimate branch of an existing lineage: The variant should be transmitted from its origina...ountry.It should differ from its ancestor by at least one nucleotide.At l...940 days ago
Illumina based assembly pipeline steps !
...n 2; optional) Variant calling Read alignment (Bowtie 2) Sort and index align...ants and consensus; default for amplicon data || BCFTools, BEDTools; default for...IGenome) Intersect variants across callers (BCFTools) De novo assembly...926 days ago
