List of comparative genomics resources !
...ti-organism system for cross-species data comparison and trans...microorganisms based on oligopeptide content of their complet...- Influenza sequence and epitope database. Search for influen...d the Associating Dendrogram Perform systematic comparison of...735 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
.... Cold Spring Harbor Laboratory Press. - Papers from a course named "Classi...6, 1816-1819 (1999). 3. Siddiq et al. 2016. Experimental test and refutation o...n Res. 1(1):2-9 2. McDonald et al. 2016. Sex speeds adaptation by altering the...735 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
....github.io/publication/natural-selection-and-camouflage/ (NetLogo also has one: https://ccl.northwestern.edu/netlogo/models/BugHuntCamouflage) Peppered moth game: https://askabi...735 days ago
727 days ago
Understanding DUMP files from NCBI Taxonomy database !
...node id in GenBank taxonomy database rank -- rank of this node (superkingdom, kingdom, ...) ...(usually article name and authors). -- The following characters are escaped in this text by a backslash:...718 days ago
Useful link to teach evolution !
....github.io/publication/natural-selection-and-camouflage/ (NetLogo also has one: https://ccl.northwestern.edu/netlogo/models/BugHuntCamouflage) Peppered moth game: https://askabi...636 days ago
Must read paper and books in evolution biology !
.... Cold Spring Harbor Laboratory Press. - Papers from a course named "Classi...6, 1816-1819 (1999). 3. Siddiq et al. 2016. Experimental test and refutation o...n Res. 1(1):2-9 2. McDonald et al. 2016. Sex speeds adaptation by altering the...636 days ago
Tools for Sequence translation !
BOrf - https://github.com/betsig/borf CodAn - https://github.com/pedronachtigall/CodAn EMBOSS-Sixpack - https://www.ebi.ac.uk/Tools/st/emboss_sixpack...602 days ago
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/release/bioc/html/apeglm.html ashr - htt...e/bioc/html/edgeR.html limma - https://kasperdanielhansen.github.io/genbio...602 days ago
Bioinformatics tools to explore SSRs in genomes !
...e used to explore Simple Sequence Repeats (SSRs), which are also kno...various organisms and can identify perfect, compound, and imperfect...and RNA sequences. It can identify perfect, compound, and imperfect...ols available for exploring SSRs. Depending on your specific needs a...483 days ago