Results for "indels"
Blogs
Structural variation: the hidden genomic treasure
...jects have revealed substantial amounts of genetic variation between individuals extending beyond single nucleotide polymorphisms (SNPs) and short indels. Structural Variations (SVs)...2745 days ago
- ...constructs ancestral indel states assuming a continuous time Markov process. FastML provides the most likely ancestral sequences, integrating both indels and characters; (ii) FastML a...
2573 days ago
- +1 more Blogs
Bookmarks
- ...Detection Basic Galaxy Tutorial Variant Detection tutorial In this tutorial we cover the concepts of detecting small variants (SNVs and indels) in human genomic DNA using a...
3696 days ago
- ...nput genome and the evidence in the reads. It then attempts to make improvements to the input genome, including: Single base differences Small indels Larger indel or block substi...
3051 days ago
- +17 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...ted from these samples mapped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment file then used for calling SNPs and InDels inside previousy identified Q...3832 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...s, clean and filter contigs, look for snps and indels., filter snps, do statistics...a fast and memory-efficient manner. Robust to INDELs and MrsFAST has a bisulphite...detection tool. It detects homozygous SNPs and indels by aligning shotgun reads to...3562 days ago
Software packages for next gen sequence analysis
...a fast and memory-efficient manner. Robust to INDELs and MrsFAST has a bisulphite...eqMap - Supports up to 5 or more bp mismatches/INDELs. Highly tunable. Written by H...detection tool. It detects homozygous SNPs and indels by aligning shotgun reads to...3285 days ago
- +6 more Top-level pages
Wire posts
News
- ...plotypeCaller and SOAPindel. The donor is an individual with serious neurological disorders, which may be linked to a high incidence of indels. One thousand indels from this individual's exome,...
3589 days ago
- ...of genetic variants such as single nucleotide polymorphisms (SNPs) and InDels. The webinar showcases SNP da...us SNPs, multi-nucleotide polymorphisms (MNPs) and insertion-deletions (InDels). Multi-omic integration of d...
2406 days ago
Opportunity posts
Visiting Scientist - Computational Genomics (two positions)
...eration sequencing DNA and RNA data Data mining and development of pipelines and troubleshooting Genome diversity analysis such as SNPs, Indels, Structural Variations, popul...3632 days ago
ResearchLabs posts
- ...nostic methods (PCR based and immunological) for identification of different groups of organisms based upon these signature proteins and conserved indels; (iv) The use of these lineag...
1997 days ago
Bio-Scripts
- ...ard) Concatenate efficiently BAM files that resulted from a scattered parallel analysis LeftAlignIndels Left-aligns indels from reads in a SAM/BAM/CRAM...
2118 days ago
Samtools commands for bioinformatician !
...ej.fasta sal_sej_sorted.bam.bam > sal_vars.bcf ### calling snp and indels # -c : find snp # -v : outp...e "bcftools" to see current version and commands ### calling snp and indels with no frequency threshold...1646 days ago
- +3 more Bio-Scripts
