List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific ge...tterplots, interactive graphs, or tag clouds. http://revigo.irb.hr/ QuickGo (EMBL-EBI Institute) It uses exten...3767 days ago
Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amounts of genetic variation b... R Package https://www.bioconductor.org/help/course-materials/2010/EMBL2010/Practical-4-StructuralVar...2760 days ago
List of genome announcement, notes and reporting journals
...new chromosome sequence, its GenBank accession number and little e...e record of the corresponding GenBank submission. Must include abst...s as they become submitted to GenBank. May also contain specificall...lomes, proteomes or genome assemblies.Standard metrics for data qua...2065 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and has, or is conjectured to have, a biological significance. For pr...2050 days ago
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Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinfor...structures http://scientific.thomson.com/products/iddb/HOMIM: a...c disorders http://www.ncbi.nlm.nih.gov/ sites/entrez?db=omim...1491 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Fu...s database A novel database server that classifies GenBank's dbEST (database of expresse...ces The TIGR Gene Indices -- clustering and assembling EST and known genes and in...734 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General in...t tax_id -- parent node id in GenBank taxonomy database ran..., kingdom, ...) embl code -- locus-name prefix; not u...l gencode from parent GenBank hidden flag (1 or 0) &n...717 days ago
Bioinformatic tools for pathogens informatics at CVR
Novel sequencing and analytical...ts new candidate virus sequences from GenBank, generates multiple sequence...ity filtering, genotyping, de novo assembly, variant detection, annotati...ReTTA (Long Read Template Targeted Assembler) is a reference assisted de...23 days ago