Results for "Bed"
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Public Databases for Bioinformatics !
...p;https://www.encodeproject.org/files/ENCFF446WOD/@@download/ENCFF446WOD.bed.gz, https://www.encodepr...anford.edu/kundaje/akundaje/release/blacklists/hg38-human/hg38.blacklist.bed.gz. The human genome version...1168 days ago
- ...<> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is d...
3037 days ago
- ...GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is d...
2828 days ago
- ...simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be used...
2769 days ago
- ...d annotation in R. Basic usage: Rscript Ideoplot.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscri...plot.R --annotate annotations.bed Options --ideobed, i A bed file of reference contig leng...
2667 days ago
- Collectively, the bedtools utilities are a swiss-army knife of to...is, set theory on the genome. For example, bedtools allows one tointers...in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While each ind...
2656 days ago
Enrichr: a comprehensive gene set enrichment analysis
...180 184 annotated gene sets from 102 gene set libraries. New features have been added to Enrichr including the ability to submit fuzzy sets, upload BED files, improved application p...2594 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), a...878 days ago
CrossMap: a program for convenient conversion of genome coordinates
...t;> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is...2195 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
JBrowse is a fast, embeddable genome browser built completely with JavaScr...out uploading them to any server. Supports GFF3, BED, FASTA, Wiggle, BigWig, BAM,...her .tbi or .idx index), REST, and more. BAM, BigBed, BigWig, and VCF data are dis...2166 days ago
