Phylogenomics/Phylogenetic website
...phylogenetics. Although we do have a Troubleshooting category for getting feedback on analyses, this is not a help site for running phylogenetics programs. A great place to chat about...3709 days ago
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SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the co...2941 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genom...2933 days ago
Linux command line exercises for NGS data processing
...the keyboard and gives them to the operating system. Most Linux systems utilize Bourne Again SHell (bash), but there are several additional shell programs on a typical Linux system suc...2901 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have b...ally expensive, forcing researchers to use faster abundance estimation programs, which only classify small su...2896 days ago
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