3023 days ago
2917 days ago
2644 days ago
2633 days ago
Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured b...2345 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
..., & Bafna, V. (2013). Cerulean: A hybrid assembly using high throughput short and long reads. arXiv preprint arXiv:1307.7933. http://arxiv.org/abs/1307.79332185 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assemb...2043 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
...aph in multicores shared memory parallel mode using graph decomposition then use filtering method to generate good quality SNPs. https://arxiv.org/abs/1809.06700 https://github.co...1583 days ago
SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs
...ent calculation for both short (Illumina) and long (ONT and PacBio) reads. Described by Alser et al. (preliminary version at https://arxiv.org/abs/1910.09020).1256 days ago