Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...cess we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have reduced computation cost forlocal alignment , whi...1198 days ago
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E-MEM: Efficient computation of Maximal Exact Matches
...bsp;E-MEM source code The source code can be downloaded here. If you use E-MEM, please cite: N. Khiste, L. Ilie, E-MEM: Efficient computation of Maximal Exact Matches for...2750 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). AN...rders of magnitude speedup. Therefore, it is useful for pairwise ANI computation of large number of genome pai...2174 days ago
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SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...ork to interpret similarity pairs as edges of a network. A very efficient algorithm, based on the Disjoint Sets Data Structure, allows the computation of sequence families with&nbs...2023 days ago
1625 days ago