2937 days ago
Best Practices for Variant Calling with the GATK
...Joel Thibault PDF Video 03/19/15 Introduction to the GATK Geraldine Van der Auwera PDF Video 03/19/15 Mapping, processing, and duplicate marking with Picard tools Ma...1577 days ago
HairSplitter: assembling long reads in an unknown number of haplotypes
...airSplitter: Very modular, can be used with any assembler Naive: makes no assumption on ploidy, parameter-free Safe: won’t artificially duplicate contigs HairSplitter...558 days ago
doubletrouble: identify duplicated genes from whole-genome protein sequences and classify
doubletrouble aims to identify duplicated genes from whole-genome protein sequences...spersed duplication (DD). Transposon-derived duplicates (TRD) can be further subdivi...users want a simpler classification scheme, duplicates can also be classified into...104 days ago