RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...his paper, we describe the RAST tool kit (RASTtk), a modular version of RAST that enables researchers to build custom annotation pipelines. RASTtk offers a choice of software for iden...2982 days ago
2893 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...ations can be replaced by a connectivity matrix and a reduced dispersal matrix describing migration only among the connected sub-populations. This offers a substantial gain in computi...2825 days ago
2773 days ago
iTOL: interactive Tree Of Life
...sp;is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel circular tree layout,...2703 days ago
2701 days ago
2672 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse information sources. GRASS offers a mixed-integer programming f...2591 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
...The overview section of the BEDOPS v2.4.26 documentation summarizes the toolkit, functionality and performance enhancements. The reference table offers documentation for all applica...2571 days ago
2558 days ago