Kmer: a suite of tools for DNA sequence analysis
More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, Assembly to Assembly Comparision tool: Comparative mapping between two genome assemblies (sa...1019 days ago
1019 days ago
Applying MinHash to cluster RNAseq samples
A kmer blog worth spending time on1010 days ago
850 days ago
Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics wi...gle genome structure by comparing the sum of kmer pair coverages (CovA + CovB)...w the haplotype structure using heterozygous kmer pairs. For example:...828 days ago