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Results for "coordinates"

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• • Jit@jit.aber

  

  Mercator

  ...n all or most of the genomes), join neighboring (adjacent in genomic coordinates, in each genome) cliques to f...ents. The cliques from each run are used to output the exact genomic coordinates of anchors within each orthol...

  2697 days ago

• • Abhimanyu Singh@abhimanyu

  

  DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes

  ...genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function whi...

  2685 days ago

• • Jit@jit.aber

  

  Dot, an interactive viewer for genome-genome comparison

  ...st commonly used software method for aligning genome assemblies. A quick script called DotPrep.py converts the delta file to a more streamlined coordinates file with an index that enabl...

  2355 days ago

• • Jit@jit.aber

  

  CrossMap: a program for convenient conversion of genome coordinates

  ...program for convenient conversion of genome coordinates (or annotation files) between...CrossMap is designed to liftover genome coordinates between assemblies. It’s...recommend using CrossMap to convert genome coordinates between species....

  2218 days ago

• • Jit@jit.aber

  

  GRSR: a tool for deriving genome rearrangement scenarios from multiple unichromosomal genome sequences

  ...mes. This tool will do the following steps: Step 1. Run mugsy to get multiple sequence alignment results. Step 2 & 3. Extraction of the Coordinates of Core Blocks, Construction...

  2098 days ago

• • Jit@jit.aber

  

  alluvial diagram

  Alluvial diagram is a variant of a Parallel Coordinates Plot (PCP) but for categorical variables. Variables are assigned to vertical axes that are parallel. Values are represented with...

  1740 days ago

• • Rahul Nayak@rahul

  

  CrossMap: program for genome coordinates conversion between different assemblies

  CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used...

  882 days ago

• • Neel@neelam

  

  SeqCAT: Sequence Conversion and Analysis Toolbox

  Your all-in-one solution for smooth conversion of sequence coordinates. Designed for bioinformatics data analysis and daily laboratory work, SeqCAT simplifies sequence coordinate conve...

  12 days ago

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