2688 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function whi...2676 days ago
Dot, an interactive viewer for genome-genome comparison
...st commonly used software method for aligning genome assemblies. A quick script called DotPrep.py converts the delta file to a more streamlined coordinates file with an index that enabl...2346 days ago
CrossMap: a program for convenient conversion of genome coordinates
...program for convenient conversion of genome coordinates (or annotation files) between...CrossMap is designed to liftover genome coordinates between assemblies. It’s...recommend using CrossMap to convert genome coordinates between species....2209 days ago
2089 days ago
1731 days ago
CrossMap: program for genome coordinates conversion between different assemblies
CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used...873 days ago
SeqCAT: Sequence Conversion and Analysis Toolbox
Your all-in-one solution for smooth conversion of sequence coordinates. Designed for bioinformatics data analysis and daily laboratory work, SeqCAT simplifies sequence coordinate conve...2 days ago