VirtualFlow: a versatile, parallel workflow platform for carrying out virtual screening
...to different types of tasks: VFLP: VirtualFlow for Ligand Preparation VFVS : VirtualFlow for Virtual Screenings They use the same core technology regarding the work...1462 days ago
Many-Core Engine (MCE) for Perl example
...elements from the input stream to the next available worker. CORE MODULES Three modules make up the core engine for MCE. MCE::Core P...queues from a single module. MCE::Queue exchanges data via the core engine to enable queuing to w...2691 days ago
2691 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
...for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3...2657 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...unique software architecture, PLAST takes full advantage of recent multi-core personal computers without re...on. It is easy to install, cost-effective, takes full advantage of multi-core processors and uses a small R...2387 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands o...recombination detection, and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis...2380 days ago
MUMmer4: A fast and versatile genome alignment system
MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix...2323 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...nge of the read length. SOAPaligner benefitted in time and space efficiency by a revolution in the basic data structures and algorithms used.The core algorithms and the indexing d...2214 days ago
Snippy: Rapid haploid variant calling and core SNP phylogeny
...l use as many CPUs as you can give it on a single computer (tested to 64 cores). It is designed with speed...hen take a set of Snippy results using the same reference and generate a core SNP alignment (and ultimately...2065 days ago
Snakemake—a scalable bioinformatics workflow engine
Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow.2112 days ago