karyoploteR: plot whole genomes with arbitrary data
...other graphics packages. The aim of karyoploteR is to offer the user an easy way to plot data along the genome to get broad genome-wide view to facilitate the identification of genome...1978 days ago
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Qualimap2: Evaluating next generation sequencing alignment data
...p;is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignm...2091 days ago
flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
...rror-prone sequences, FlexiDot harbors routines for strict and relaxed handling of mismatches and ambiguous residues. The custom shading modules facilitate dotplot interpretation and mo...1499 days ago
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ExRec: Exclusion of Recombined DNA
...wo other applications in the package convert the recombination-filtered data into single-locus NEXUS or PHYLIP files. The ExRec package can thus facilitate species delimitation, species...66 days ago