1394 days ago
URMAP, an ultra-fast read mapper
URMAP, a new read mapping algorithm. URMAP is an order of magnitude faster than BWA with comparable accuracy on several validation tests. On a Genome in a Bottle (GIAB...1329 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source GPL-licensed...1248 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source GPL-licensed...987 days ago
921 days ago
UniqueKmer: Generate unique KMERs for every contig in a FASTA file
...e k-mers for each contig. The output unique k-mer file and Genome file can be used for fastv: https://github.com/OpenGene/fastv, which is an ultra-fast tool to identify and vis...916 days ago
867 days ago
ULTRA (ULTRA Locates Tandemly Repetitive Areas) : Effective Labeling of Repetitive Genomic Sequence
ULTRA is a tool to find and annotate tandem repeats inside genomic sequence. It is ab...y repetitive sequence, regardless of the size of sequence or length of repeats. ULTRA offers meaningful annotation...11 days ago
MetaGraph: Ultra Scalable Framework for DNA Search, Alignment, Assembly
The MetaGraph framework is designed to work with a wide range of input data sets, indexing from a few samples up to the contents of entire archives with hundreds...11 days ago