PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...ty search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique software architecture, PLAST...2399 days ago
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STRUM: structure-based prediction of protein stability changes upon single-point mutation
...g regression approch to train the Gibbs free-energy changes on a variety of features at different levels of sequence and structure properties. The unique characteristics of STRUM is t...2115 days ago
BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus
BAUM, breaks the whole genome into regions by adaptive unique mapping; then the local OLC is used to assemble each region in parallel. BAUM can: (1) perform reference-assisted assembl...2071 days ago
RopeBWT2: Incremental construction of FM-index for DNA sequences
...the end of the sequences. This algorithm can be largely considered a mixture of BCR and dynamic FM-index. Nonetheless, ropeBWT2 is unique in that it may implicitl...2071 days ago
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simuG: a general-purpose genome simulator
...tions, copy number variants, inversions and translocations) for any organisms (including human). The simplicity and versatility of simuG make it a unique general-purpose genome simula...1672 days ago
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
...ome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the f...1611 days ago