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SLURM workload manager software, a free open-source workload manager designed specifically to satisfy the demanding needs of high performance computing. This page is a HOWTO guide...2973 days ago
- ...Reads from small-RNA sequencing contain the 3’ sequencing adapter because the read is longer than th...s by finding the adapter or primer sequences in an error-tolerant way. It can also modify and filter reads...
2964 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest ve...
2964 days ago
- ...he evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compute full...
2964 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...require any pre-processing, such as repeat masking, since it will automatically detect ambiguous mappings....ning two bird-size genomes (~1.2 Gb) is around two days on 24 CPUs. You can find the manual here. Downlo...2964 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2954 days ago
Hagfish - assess an assembly through creative use of coverage plots
...gfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or identification of structural variation i...2957 days ago
RCircos: an R package for Circos 2D track plots
...ts with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It can also serve as a base tool to...2957 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all...coupled with the Smith-Waterman algorithm. This method is well-suited to capture mismatches as well as sh...2957 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2954 days ago
