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2956 days ago
2956 days ago
2956 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...require any pre-processing, such as repeat masking, since it will automatically detect ambiguous mappings....ning two bird-size genomes (~1.2 Gb) is around two days on 24 CPUs. You can find the manual here. Downlo...2956 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2946 days ago
Hagfish - assess an assembly through creative use of coverage plots
...gfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or identification of structural variation i...2948 days ago
RCircos: an R package for Circos 2D track plots
...ts with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It can also serve as a base tool to...2949 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all...coupled with the Smith-Waterman algorithm. This method is well-suited to capture mismatches as well as sh...2948 days ago
2946 days ago