GIGGLE: a search engine for large-scale integrated genome analysis
...e that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interval files. GIGGLE (https://github.com/ryanlayer/giggle) scales...2363 days ago
AliTV—interactive visualization of whole genome comparisons
...visualized data as well as the export of publication-ready high-quality figures. AliTV is freely available at https://github.com/AliTVTeam/AliTV https://alitvteam.github.io/AliTV/...2363 days ago
Dot, an interactive viewer for genome-genome comparison
...at enables Dot to read in more alignments in certain regions on demand. Dot, an interactive viewer for genome-genome comparison https://dnanexus.github.io/dot/2359 days ago
Alfred: BAM Statistics and Feature Counting
...t Alfred is to download a statically linked binary from the Alfred github release page. Alternatively,...les so you need to do a recursive clone. git clone --recursive https://github.com/tobiasrausch/alfred.git...2350 days ago
RGFA: powerful and convenient handling of assembly graphs
...er. We illustrate a use case, in which the assembly of a repetitive metagenomic fosmid insert was completed using a script based on RGFA. https://github.com/ggonnella/rgfa1623 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper:&...2335 days ago
An Introduction to Applied Bioinformatics
IAB is primarily being developed by Greg Caporaso(GitHub/Twitter: @gregcaporaso) in the Caporaso Lab at Northern Arizona University. You can find information...2312 days ago
2312 days ago
Carefully opt for human reference genome
...There are several other versions of GRCh37/GRCh38. What’s wrong with them? Here are a collection of potential issues: More at http://lh3.github.io/2017/11/13/which-human-ref...1594 days ago
Reference-free prediction of rearrangement breakpoint reads
...duces fewer false-positive reads. To our knowledge, this is the first method to detect breakpoint reads without using a reference genome. https://github.com/ewijaya/slidesort-bpr2306 days ago