SKESA: strategic k-mer extension for scrupulous assemblies
...r assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contigui...2026 days ago
pyGenomeTracks: Standalone program and library to plot beautiful genome browser tracks
pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. Currently, it is possible to plot: bigwig bed (many options) bedgraph links (represented as arcs) Hi-C matrices (if HiCExplorer is installed)2031 days ago
pWhatsHap: a parallel, high-performance version of WhatsHap
...s pipelines, we have designed and engineered pWhatsHap, a parallel, high-performance version of W...xecution time for haplotyping, while the provided results enjoy the same high accuracy as that provided by&...2026 days ago
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed f...potentially other SMS technologies to a reference. lordFAST not only has higher sensitivity than the availa...2013 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental designs that may include replications, treatments, locations and times, can be account...2003 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
Some parts of a genome may have a very high degree of heterozygosity. This causes contigs for both haplotypes of that part of the genome to be assembled as separate primary contigs,...1993 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
...encing projects, it was cited "the most successful (gene finding) program (Yu et al. (2002) Science 296:79) and was used to produce 87% of all high-evidence predicted genes (Gof...1990 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
...sto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads....1972 days ago
1972 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
...o improve the accuracy of a long read assembly using short reads How to assess the quality of an assembly https://bioinformaticsdotca.github.io/high-throughput_biology_20171960 days ago