Hawkeye: an interactive visual analytics tool for genome assemblies
...d are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye. https://ge...2010 days ago
GenoViz: Visualization software for genomics
...wser (IGB).For more information about IGB, visit http://bioviz.org.Source code for the project was host....bitbucket.org/lorainelab/integrated-genome-browser. We are still using SourceForge to distribute new releas...2009 days ago
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Genome assembly forensics: finding the elusive mis-assembly
...y errors in both draft and finished genomes. The software described is compatible with common assembly formats and is released, open-source, at http://amos.sourceforge.net. https://www.ncbi.n...1984 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
.... For further details about the original technique see the UpSet website. You can also check out the UpSetR shiny app. Here is the source code for the shiny wrapp...1982 days ago
plumber:An R package that converts your existing R code to a web API
plumber allows you to create a REST API by merely decorating your existing R source code with special comments. Take a look at an example. # plumber.R #* Echo back the input #* @...1938 days ago
HumCFS: a database of fragile sites in human chromosomes
...to address these issues, we develop this platform HumCFS, which provides comprehensive information about experimentally identified CFS at a single source. https://link.springer.com/e...1899 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
The pipeline is open-source and hosted in a public Bitbucket repository. TRITEX has been run on highly inbred genotypes of barley (Hordeum vulgare), tetraploid wheat (...1779 days ago
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