Phytozome v12.1: plant science community hub for accessing palnts genomic data
Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, provides JGI users and the broader plant science community a h...iplantae species. More than half of these...quenced, assembled and/or annotated with JGI Plant Science program resource...1559 days ago
PPAI: a web server for predicting protein-aptamer interactions
PPAI can query aptamers and proteins, predict aptamers and predict protein-aptamer interactions in batch mode precisely and efficiently, which would be a novel bioinformatics tool for the research of protein-aptamer interactions. PPAI web-server is freely available at http://39.96.85.9/PPAI1472 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Datase...s extracted from GenBank Rel.123. The aim of...d material to train and to assess the p...introns have been extracted from these entries. Details about extr...(29+30), and redundant (218+226) there...ice Site Data Set , Nucleic Acids Research,...1472 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. This...tperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art s...1497 days ago
1467 days ago
PhiSpy: PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes
PhiSpy identifies prophages in Bacterial (and pro...haeal) genomes. Given an annotated genome it will use several approaches to identify the most likely prophage regions....formatics Lab Improvements, bug fixes, and other chan...1454 days ago
1445 days ago
Sibelia: A comparative genomics tool
Sibelia: A comparative genomics tool: It...ssists biologists in analysing the gen...omic variations that correlate with pathogens, or the geno...ifferent environments. Sibelia will also be helpful for the evolutionary and genome rearr...2) regions that present in one group of genomes but not in others, (3...1401 days ago
Applied Computational Genomics Course at UU: Spring 2020
This course will provide a comprehensive introduction to fundame...nd experimental approaches in the analys...n DNA sequencing technologies will be explored including sequence alignment, the identification of genetic var...Students will learn and apply the fu...derlie computational genomics research....1278 days ago
1264 days ago