Understanding pango networks !
In the vast majority of instances it is expected that Pango lin...by the Lineage Designation Committee. https://www.pango.network/th...stem/statement-of-nomenclature-rules/ https://www.pango.network/how-does-the...986 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
Gaussian Network Model (GNM) is a powerful...sample conformational dynamics based on contact topology in a coarse-grained...;environment’ here can be crystal contacts defined in structures solved...NM counterpart is first derived in this work and proven t...894 days ago
Ten quick tips for deep learning in biology
By taking a comprehensive and careful approach to deep learning based on critical thinking about research questions, planning to maintain rigor, and discerning how work might have f...826 days ago
CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
CrowdGO is a protein Gene Ontology predictor using a meta a...on and recall. Please note that the CrowdGO snakemake workflow is currently only tested on Ubuntu. It should work on OSX, but please report any errors to maa...765 days ago
507 days ago
homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
This tutorial describes the usage of homologizer to p...iated version of a soon-to-be published paper in Methods in Molecular Biology. Please see that paper for many more details...391 days ago
149 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
Orthoflow is a workflow for phylogenetic inference...nes. Our goal was to make it straightforward to wor...of orthogroups. Through the use of OrthoSNAP, many add...lity alignments for phylogenetic inference. The workflow produces...128 days ago
UniAligner: a parameter-free framework for fast sequence alignment
UniAligner (formerly, TandemAligner) is the first parameter-fre...-dependent alignment scoring that automatically changes for any pai...ment approaches, such as the Smith-Waterman algorithm, that work well for mos...112 days ago
93 days ago