1535 days ago
SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
...cScanX a popular synteny and collinearity detection toolkit and generate publication ready images. SynVisio requires two files to run: The simplified gff file that was used as an inpu...1487 days ago
Liftoff: an accurate tool that maps annotations in GFF or GTF between assemblies
...een assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated “chain” file as input, Liftoff is a standa...1456 days ago
1412 days ago
parallelLastz: Lastz with multi-threads support.
...am is for single computer with multiple core processors. When the query file format is fasta, you can spec...as the original lastz program. This is useful when you lastz a big query file to a huge reference like huma...1404 days ago
Liftoff: An accurate GFF3/GTF lift over pipeline
...een assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated “chain” file as input, Liftoff is a standa...1284 days ago
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompressing the source package, you can find an executable file ktrim under bin/ dire...1230 days ago
OGDRAW - Draw Organelle Genome Maps
...nbsp;or EMBL/ENA format into graphical maps. The input has to be a GenBank or EMBL/ENA flat file wherase the output can vary among several types of files. The application is optimize...995 days ago
927 days ago
UniqueKmer: Generate unique KMERs for every contig in a FASTA file
...erate unique k-mers for every contig in a FASTA file. Unique k-mer is consisted o...rands). This tool accepts the input of a FASTA file consisting of many contigs, a...-mers for each contig. The output unique k-mer file and Genome file can be used f...922 days ago