repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two contigs A and B is considered correc...2281 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and e...ber - Uppsala2016 November - Uppsala2017 November - Uppsala Introduction to Bioinformatics Using NGS Data 2015 February...2254 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its hi...sp;Roman Cheplyaka for the interview). It is available at both the bioinformatics chat and iTunes. &...2233 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a refer...ontig length. The Mix algorithm, approach and results were published in BMC bioinformatics : http://www.biomedcentr...2233 days ago
Jvarkit : Java utilities for Bioinformatics
Collection of Java tool kits for bioinformatics works: Jvarkit : Java utilities for Bioinformatics2202 days ago
2199 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment appr...inly designed by Bo Liu & Yan Gao and developed by Yan Gao in Center for Bioinformatics, Harbin Institute of Technolo...2226 days ago
WhatsHap: fast and accurate read-based phasing
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long rea...2213 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fa...visit: https://kat.readthedocs.org/en/latest/ https://academic.oup.com/bioinformatics/article/33/4/574/2664339 ...2026 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License....oplot.bioinf.be and command line tools. https://academic.oup.com/bioinformatics/article/34/15/2666/49349392139 days ago