OGDRAW - Draw Organelle Genome Maps
...sp;or EMBL/ENA flat file wherase the output can vary among several types of files. The application is optimized to create detailed high-quality maps of organellar genomes (p...971 days ago
RNA-seq workflow: gene-level exploratory analysis and differential expression
...to the reference transcripts, and prepare gene-level count datasets for downstream analysis. We will perform exploratory data analysis (EDA) for quality assessment and to explore the...967 days ago
Ten quick tips for deep learning in biology
...w work might have far-reaching consequences with ethical dimensions, the life science community can advance reproducible, interpretable, and high-quality science that is enriching and...799 days ago
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
...he expected k-mer multiplicity in the reads, independently of the quality of the read alignment and var...uding the first complete human genome. Moreover, we introduce assembly quality and completeness metrics that...790 days ago
GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
The GenomeQC web application is implemented in R/Shiny version 1.5.9 and Python 3.6 and is freely available at https://genomeqc.maizegdb.org/ under the GPL li...745 days ago
Bioinformatics Training Material !
...ree to use Written in markdown or similar NOTE: This list of courses is selected only based on the above criteria.There are no checks on quality. https://glittr.org/?per_pag...442 days ago
PhyloHerb: A highâthroughput phylogenomic pipeline for processing genome skimming data
...+5.8S+ITS2+28S), alignments of gene and intergenic regions, and a species tree. It is designed to be a high throughput program dealing with lower quality data. Examples include l...270 days ago
ReConPlot: an R package for the visualization and interpretation of genomic rearrangements
...r multiple chromosomes. ReConPlot is based on the popular ggplot2 package, thus allowing customization of plots and the generation of publication-quality figures with minimal effort.171 days ago
122 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
...ers can specify a range of alignment filtering settings to retain high-quality alignments for phylogenetic i...he phylogenetic results, includes a range of diagnostics to verify the quality of the results.102 days ago