308 days ago
FiNGS: Filters for Next Generation Sequencing
...sharing of these with others. FiNGS reliably improves upon the precision of default variant caller outputs and performs better than other tools designed for the same task....1221 days ago
IVA: accurate de novo assembly of RNA virus genomes
IVA (Iterative Virus Assembler) designed specifically for read pairs sequenced at highly variable depth from RNA virus samples. We tested IVA on datasets from 140 sequenced samples fro...1104 days ago
LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data
LoReTTA (Long Read Template-Targeted Assembler), a tool designed for performing de novo assembly of long reads generated from viral genomes on the PacBio platform. LoReTTA exploits a r...1104 days ago
1019 days ago
999 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
...ets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and...999 days ago
457 days ago
PhyloHerb: A highâthroughput phylogenomic pipeline for processing genome skimming data
...genome assemblies, nuclear ribosomal DNAs (NTS+ETS+18S+ITS1+5.8S+ITS2+28S), alignments of gene and intergenic regions, and a species tree. It is designed to be a high throughput progr...300 days ago
152 days ago