BioGPS: Spotlight on the Gene Expression Atlas
BioGPS opened 2016 with a publication in Nucleic Acids Research, right after the New Year holiday. Throughout the year, new designs for the site were being created, revie...2067 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
...e module) and functional gene set enrichment(Enrichment mod...r Annotate module, it accepts gene list as input, including IDs...about pathways, diseases, and Gene Ontology. For Enrichment modu...cept either gene list or gene expression data as input, and generates...2066 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface, th...ysis of colinear syntenic blocks (CSBs) - groups of genes that are consistently locate...score and clustered to families according to their gene conte...2061 days ago
MITOS: improved de novo metazoan mitochondrial genome annotation
Allows automatic annotation of metazoan mitochondrial genomes. MITOS is a pipeline designed to compute a cons...e software allows for a systematic error screening, the standardisation of gene name and gene bound...2059 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to rea...Genbank, EMBL, blast, Mauve, and from user-generated tab files Plot several...utomatic annotations for genomes, based on gene names...2012 days ago
KEGG Mapper – Reconstruct Pathway
Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome an...ome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms...of the gene list contains the user-defined gene ident...2012 days ago
EGAD: Ultra-fast functional analysis of gene networks
With the EGAD (Extending ‘Guilt-by-Association’ by Degree) package, we present a series of highly eff...idation and an analytic determination of the optimal prior to guess candidates genes acro...2010 days ago
2007 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
FGENESH is the fastest (50-100 times faster than GenScan) and most accurate gene finder available - see the figure and the t...rojects, it was cited "the most successful (gene finding) program (Yu et...produce 87% of all high-evidence predicted genes (Gof...2004 days ago
Genome Annotation using MAKER tutorial !
MAKER is a great tool for annotating a reference genome using empirical and ab initiogene predi...2004 days ago