MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...rive gene changes in 4 settings: 1) A cell line expressing or lacking single TF, 2) Breast tumors divide...50 designations 3) Whole brain samples from WT mice or mice lacking a single TF in a particular neuronal s...1284 days ago
1220 days ago
QuasR: Quantification and annotation of short reads in R
...f typical high throughput sequencing experiments, starting from the raw sequence reads, over pre-processing and alignment, up to quantification. A single R script can contain all step...1024 days ago
1019 days ago
898 days ago
odgi: optimized dynamic genome/graph implementation
...king and unpacking. The RAM and computational savings are substantial. In partially ordered regions of the graph, most deltas will require only a single byte.851 days ago
GenomeTools: The versatile open source genome analysis software
... genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is b...851 days ago
830 days ago
gfastats: The swiss army knife for genome assembly.
gfastats is a single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation. ...633 days ago
Collection of Graph Visualization tools !
Standard approaches to genome inference and analysis relate sequences to a single linear reference genome. This is efficient but has a fundamental problem: Differences from this refer...494 days ago