LibsDyogen: Libibrary for comparative genomics
Library of usual classes and functions written in python and used in the Dyogen team for comparative genomics applications. Collaborative python library used in the DYOGEN teamfor studying the evolution of gene order in vertebrates. http://www.ibens.ens.fr/?rubrique43&lang=fr1634 days ago
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies
...adjacencies, namely DeCo, DeCoLT, ART-DeCo, and DeClone. In a few minutes, DeCoSTAR can reconstruct the evolutionary history of domains inside genes, of gene fusion and fission events, or...1624 days ago
1600 days ago
alien_index : identify potential contaminants or horizontally transferred genes in transcriptomes.
...ential contaminants or horizontally transferred genes in transcriptomes. algorith...orithm described in the following: Gladyshev, Eugene A., Matthew Meselson, and Irina R. Arkhipova. "Massive horizontal gene transfer in bdelloid rotifers...1594 days ago
1586 days ago
PANEV: an R package for a pathway-based network visualization
...way NEtwork Visualizer) is an R package set for gene/pathway-based network visuali...on information available on KEGG, it visualizes genes within a network of multiple...o interpret functional profiles of a cluster of genes. https://bmcbioinformatics....1587 days ago
1568 days ago
1561 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
...in metagenomic analysis workflows including data pre-processing, metagenome assembly, taxonomic and functional classification, genome binning, and gene assignment. We aim to deliver...1528 days ago
1524 days ago