flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
...handling of mismatches and ambiguous residues. The custom shading modules facilitate dotplot interpretation and motif identification by adding information on sequence annotations and s...1524 days ago
NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences
...ese features make NucDiff to be perfectly suitable to compare assemblies with each other or with available reference genomes. NucDiff provides information about the types of difference...1513 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
The pipeline can use information from scaffolded assemblies (for example from HiC or 10X Genomics), or even from diverged (~65-100 Mya) reference genomes for ordering the contigs an...1204 days ago
1471 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
...SVEngine takes as input reference contigs in FASTA files, variant meta distribution as specified in META files (see Manual) or specific variant information as specified in VAR files (se...1453 days ago
1268 days ago
Breedbase is a comprehensive breeding management and analysis software
...software. It can be used to design field layouts, collect phenotypic information using tablets, support the co...ng samples in a field, store large amounts of high density genotypic information, and provide Genomic Selectio...1267 days ago
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