Results for "RA"
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...of highly heterozygous diploids from massively parallel shotgun sequencing data....Kajitani R, Toshimoto K, Noguchi H, Toyoda A, Ogura Y, Okuno M, Yabana M, Harada...;24(8):1384-95. doi: 10.1101/gr.170720.113. [abstract | full text]2942 days ago
- This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for bi...
2941 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...whole-genome synteny alignment program. It takes two genomes, compu...ing genes, non-coding genes, or neutral sequences. Satsuma does not...ambiguous mappings. Satsuma has parallelization built-in and is de...uma in your research, please cite: Grabherr, M. G., Russell, P., Mey...2941 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2932 days ago
Hagfish - assess an assembly through creative use of coverage plots
...e used in data analysis of Next Generation Sequencing (NGS) experime...agfish builds on the concept of coverage plots and aims to assist (a...ssembly or identification of structural variation in a genome re-seq...he insert size of the paired end library is. Quick links: Inst...2934 days ago
RCircos: an R package for Circos 2D track plots
...package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processi...genomic research data. It can also serve as a base tool to generate complex Circos images. Mor...2934 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...sensitive and open-source program for mapping second and third-generation sequencing reads to a ref...ls, MOSAIK can align reads generated by all the major sequencin...stent mappings for all the generated data (sequencing technolog...wing interest in larger structural variant (SV) discovery, MOSA...2934 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2932 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe...2933 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://ge...2933 days ago
