ExRec: Exclusion of Recombined DNA
ExRec (Exclusion of Recombined DNA) is a Python pipelin...s: the first two convert folders of NEXUS or PHYLIP files into the standard input file...ion-filtered data into single-locus NEXUS or PHYLIP files. The ExRec package can thus f...83 days ago
Minda: a tool for evaluating structural variant (SV) callers
Minda is a tool for evaluating structural variant (SV) callers that standardizes VCF records for compatibility with both germline and somatic SV callers, benchmarks against a single VCF input file, or benchmarks against an ensemble call set created from multiple VCF input files.79 days ago
Panacus : A Counting Tool for Pangenome Graphs
panacus is a tool for calculating statistics for GFA files. It supports GFA files with P and W li...4 days ago