EAGLER: a scaffolding tool for long reads.
EAGLER is a scaffolding tool for long reads. The scaffolder takes as input a draft...created by any NGS assembler and a set of long reads. The long reads are used to e...AGLER supports both PacBio and Oxford Nanopore reads. The tool should be compatib...2202 days ago
2201 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
...ontigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads....). Cerulean: A hybrid assembly using high throughput short and long reads. arXiv preprint arXiv:1307.79...2201 days ago
HALC: High throughput algorithm for long read error correction
...roughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from th...gorithms while maintaining comparable accuracy. The HALC corrected long reads can thus result in 11.4-60.7%...2197 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
...red-read information to iteratively increase the size of existing contigs. Initially, those contigs can be individual reads from a subset of the paired-read dataset, non-paired reads from sequencing technologies...2195 days ago
npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
npScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single la...2195 days ago
2195 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffold genomes. This tool aims to improve the completeness of both protein-coding and non-coding...2194 days ago
2193 days ago
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence alignments to file. It uses the Needleman-Wun...2187 days ago