2192 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffold genomes. This tool aims to improve the completeness of both protein-coding and non-coding ge...2191 days ago
2191 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms th...2223 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro means of generating libraries comprised of 9216 indexed pools, each of which contains thousands of s...2220 days ago
2219 days ago
LAMSA: fast split read alignment with long approximate matches
...fragments and co-linearly align them to solve the small variations or sequencing errors, and mitigate the effe...AMSA with simulated and real datasets having various read lengths and sequencing error rates, the results demo...2219 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...signed for speed and accuracy across diverse sequencing technologies, including but n...GS short reads (Illumina HiSeq) clone-based sequencing (Fosmid or BAC clones) SMRT...and accurate haplotype assembly for diverse sequencing technologies. Genome Res. gr....2219 days ago
Circlator: automated circularization of genome assemblies using long sequencing reads
...d benchmarks are described in the Genome Biology manuscript. Citation: "Circlator: automated circularization of genome assemblies using long sequencing reads", Hunt et al, Genome Bi...2219 days ago
2211 days ago