Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be guided through the genome assembly...embly using short reads How to assess the quality of an assembly https://bioinfor...1959 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
NxRepair is a python module that automatically detects large structural errors in de novo a...the correct, unaffected contigs. https://nxrepair.readthedocs.io/en/latest/tutorial.html nxrepai...1955 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization o...s are segregating. For more background see also the publication at BMC Bioinfor...1948 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline driver that invokes an annotation pipeline (PhATE) across a user...1843 days ago
1741 days ago
MFannot : a program for the annotation of mitochondrial and plastid genomes
MFannot is a program for the annotation of mitochondrial and plastid genomes MFannot is a program for the annotation of mitochondrial and plastid genomes. It is a PERL...1741 days ago
1670 days ago
Bioinformatics web development course
...development course, targeted at Biology and Bioinformatics students, aims at teaching fr...to develop and deploy web applications for Bioinformatics. No previous programming knowledge is assumed. By following this tutorial you will learn the fundamenta...1668 days ago
Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syn...in many cases better than) C/C++. Learn more by following the tutorial or from the cookboo...1652 days ago
simuG: a general-purpose genome simulator
Simulated genomes with pre-defined and random genomic variants can be very useful for benchmarking genomic and bioinfor...1647 days ago