1993 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at Gi... structure modules serve for the analysis of sequence and structural data analysis respectively, database&n...data and supports various file formats and analysis and manipulation functions.1993 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome a...completeness and correctness metrics BUSCO added for enhanced reference-free analysis The concept of upper bound&n...1989 days ago
GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modificat...f histone H3 (H3K4me3) is associated with gene activation and its genome-wide enrichme...1983 days ago
1980 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visualization system enhanced for RNAseq, ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU allows...1975 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be g...assembly starting with data quality control, through to building contigs and analysis of the results. At the end of...1960 days ago
Roary: the Pan Genome Pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies...sed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would...1958 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model org...1741 days ago
1649 days ago