Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome...completeness and correctness metrics BUSCO added for enhanced reference-free analysis The concept of upper bound&n...2020 days ago
2011 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visualization system enhanced for RNAseq, ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU allows...2007 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be...assembly starting with data quality control, through to building contigs and analysis of the results. At the end of...1991 days ago
Roary: the Pan Genome Pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies...sed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would...1989 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model org...1772 days ago
1680 days ago
BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface Bio...1291 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biological data because o...models, Hidden Markov models, and Bayesian networks) for biological sequence analysis and systems biology. Other ma...1645 days ago
modelStudio: a package automates the explanation of machine learning predictive models
The modelStudio package automates the explanation of machine learning predict...tions. Tools for model exploration unite with tools for EDA (Exploratory Data Analysis) to give a broad overview of...1623 days ago