Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
...lotypes in a top–down manner. And along a guided tree, it iteratively merges sibling leaves in a bottom–up manner if they are similar enough. Here, the similarity is def...2077 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves...2071 days ago
swgis v2.0 : a seqword genomic island sniffer
...yotic genomes. swgis v2.0 was tested on several eukaryotic species of different lineages. all identified genomic islands were deposited in the eugi database. download swgis v2...2064 days ago
2060 days ago
visNetwork: an R package for network visualization, using vis.js javascript library
visNetwork is an R package for network visualization, using vis.js javascript library (http://visjs.org/). All remarks and bugs are welcome on github : https:/...1995 days ago
HumCFS: a database of fragile sites in human chromosomes
...breakge when cells are exposed to replicative stress. Since from the discovery of chromosomal fragile sites/regions (CFS), several line of evidence suggests their involvement in hum...1892 days ago
2025 days ago
BLAST options, setting and defaults
...amino acid comparisons no default default = blosum62 default = blosum62 default = blosum62 default = blosum62 no default Supported and Suggested Values for Ga...2025 days ago
KEGG Mapper – Reconstruct Pathway
...mbers. Each line of the gene list contains the user-defined gene identifier followed by, if any, the assigned K number. The mapping is performed through the K numbers against the KE...2023 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
...tem enhanced for RNAseq, ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data processing...2000 days ago