LSC :a long read error correction tool
Getting Started These simple steps will help you integrate LSC into your transcriptomics analysis pipeline. Read the LS...2163 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from l...ers and generates two integrated call sets (sensitive/stringent) for different analysis purpose. The output of NextSV...2159 days ago
AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
Long read alignment analysis. Generate a reports on sequence alignments for...r patterns, annotations and rarefraction curve analysis. The most basic analysis only...patible xhtml to visualize/share/store/extract analysis results. https://f1000resear...2158 days ago
Snippy: Rapid haploid variant calling and core SNP phylogeny
Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use as many CPUs as y...2085 days ago
LRCstats: a tool for evaluating long reads correction methods
LRCstats is an open-source pipeline for benchmarking DNA long read correction algo...ng reads are plagued by high error rates, which can cause issues in downstream analysis. Long read correction algorit...2143 days ago
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SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was written f...tion of data groups for visualisation and analysis Visualisation of mapped regi...omparisons between data sets Statistical analysis of data to find regions of in...2123 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete...2102 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high...2085 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface...nts a novel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic blocks (...2080 days ago