2010 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHu... structure modules serve for the analysis of sequence and structural data analysis respectively, database&n...data and supports various file formats and analysis and manipulation functions.2010 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome ass...ompleteness and correctness metrics BUSCO added for enhanced reference-free analysis The concept of upper bound&n...2005 days ago
1996 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visualization system enhanced for RNAseq, ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU allows...1992 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more gen...than 3 minutes on a Mac desktop computer using only the read sequences and a transcri...1989 days ago
gVolante: Completeness Assessment of Genome/Transcriptome Sequences
A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly available data in its database section1983 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be gui...assembly starting with data quality control, through to building contigs and analysis of the results. At the end of...1977 days ago
Roary: the Pan Genome Pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in...ed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would...1974 days ago
1827 days ago