Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life
Ancestral Genomes (http://ancestralgenomes.org) is a resource for comprehensive...ons of these ‘fossil genomes’. Comprehensive sets of protein-coding genes have been reconstructed for...2068 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows th...ank, EMBL, blast, Mauve, and from user-generated tab files Plot several...atic annotations for genomes, based on gene names Add a user-generated t...2028 days ago
KEGG Mapper – Reconstruct Pathway
Reconstruct Pathway is a KEGG PATHWAY mapping...nome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms...e of the gene list contains the user-defined gene identifier followed by, if an...2028 days ago
2028 days ago
EGAD: Ultra-fast functional analysis of gene networks
With the EGAD (Extending ‘Guilt-by-Association’ by Degree) package, we pre...lidation and an analytic determination of the optimal prior to guess candidates genes across multiple functional s...2026 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/biotite-dev/biotite). This package is simple to use especially for the beginners in progr...2022 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
FGENESH is the fastest (50-100 times faster than GenScan) and most accurate gene finder available - see the fi...ts, it was cited "the most successful (gene finding) program (Yu et...uce 87% of all high-evidence predicted genes (Goff et al. (2002) Sci...2020 days ago
Genome Annotation using MAKER tutorial !
MAKER is a great tool for annotating a reference genome using empirical and ab initiogene predictions. GMOD, the u...2019 days ago
GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings...n structure more dense or loose, the gene expression can be turned on o...tone H3 (H3K4me3) is associated with gene activation and its genome-wid...such kind of overlapping between the gene lists of different histone mo...2012 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualization and data sharing in genomics. Our flagship product is Integrated Genome Browser...2007 days ago