UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
...ere is the source code for the shiny wrapper. A Python package called py-upset to create UpSet plots has been created by GitHub user ImSoErgodic.1984 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
...ibutions at variant sites where only two bases are segregating. For more background see also the publication at BMC Bioinformatics. https://github.com/clwgg/nQuire1981 days ago
SDA: Long-read sequence and assembly of segmental duplications
Segmental Duplication Assembler (SDA; https://github.com/mvollger/SDA) constructs graphs in which paralogous...and assembly of long reads corresponding to distinct paralogs. https://github.com/mvollger/SDA1948 days ago
OMTools: a software package for visualizing and processing optical mapping data
...(OMView), data processing and simulation. These modules together form an accessible and convenient pipeline for optical mapping analyses. https://github.com/TF-Chan-Lab/OMTools1925 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and accurate reference-guided scaffolding of draft genomes. bio...1905 days ago
1843 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
...uantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X). https://github.com/clemgoub/dnaPipeTE/wiki/d...1788 days ago
MFannot : a program for the annotation of mitochondrial and plastid genomes
MFannot is a program for the annotation of mitochondrial and plastid genomes MFannot is a program for the annotation of mitochondrial and plastid genomes. It is a PERL...1774 days ago
Retrieving Taxonomic Information with R
This vignette will introduce users to the retrieval of taxonomic information with myTAI. The taxonomy() function implemented in myTAI relies on...1772 days ago
1769 days ago