Results for "IG"
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GenomeRing: alignment visualization based on SuperGenome coordinates
...Such analyses are often based on whole-genome alignments to elucidate structural...Computational tools that can visualize genome alignments in a meaningful manner...er with various supplemental data, which may be highly heterogeneous, remains a c...2725 days ago
- ...A, a fast and flexible hash-based aligner. YAHA is as fast and accur...BWA-SW at finding the single best alignment per query and is dramati...MegaBLAST at finding all possible alignments. Unlike other aligners...graph to find the optimal set of alignments that cover a query usin...
2723 days ago
- EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.A full list of supported software packages is available here.
2716 days ago
Many-Core Engine (MCE) for Perl example
...MCE options are described here. MCE::Signal Temporary directory creation, cleanup, and signal handling. MCE::Util Util...ns (chunk_size and max_workers) are configured automatically as well as...ltiple code blocks in parallel with a slight change to syntax from MCE::...2712 days ago
- Harvest is a suite of core-genome alignment and visualization tools for quickly a...c trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive visualization of alignments, trees and variants Ha...
2712 days ago
- ...rehensive list of Perl 6 resources, including tutorials, how-tos and FAQs (Frequently Asked Questions). You may also be interested in the Perl 6 design documents, which are in some...
2710 days ago
- ...y is not a concern, as incorrect annotations are not likely not have significant alignments with other gene annotat...cliques (those that have exons in all or most of the genomes), join neighboring (adjacent in genomic c...
2706 days ago
FSA: Fast Statistical Alignment
...reconstruction methods like Neighbor-Joining build a phylogeny...for constructing a multiple alignment from pairwise comparison...ods for constructing better alignments: FSA uses machine-le...included GUI, MAD (Multiple Alignment Display), can display th...2706 days ago
- ...tate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R --annotate annotations.bed Options --ideobed, i A bed file of reference contig lengths/chromosome names -...
2699 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widl...
2696 days ago
