RNA-seq workflow: gene-level exploratory analysis and differential expression
Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bi...re quantified to the reference transcripts, and prepare gene-lev...the relationship between samples, perform differential gene...991 days ago
922 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
A phylogeny based comparative genomics software to analyze the genetic environment of genes. The user can select one or several taxa and p...bly/NR database and searched for the respective gene. Al...visualized, enabling comparison of synteny and gene...911 days ago
898 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformati...o;libgenometools” which consists of several modules. If you are interested in gene...875 days ago
AGORA: Algorithm for Gene Order Reconstruction in Ancestors
AGORA stands for “Algorithm for Gene Order Reconstruction in Ancestors” and was develo.../ / ((___/ / // | | // | | AGORA is used to generate...l genomes for the Genomicus online server for gene...848 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in s...ly along evolutionary time. Once a query gene has been entered, it is displ...all the ancestral species within the phylogenetic...f extant species 200 Number of extant gene...848 days ago
GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
The GenomeQC web application is implemented in R/Shiny version 1.5.9 and Python 3.6 and is freely available at https://genomeqc.maizegdb.org/ under the GPL l...769 days ago
Quip: Aggressive compression of FASTQ, SAM and BAM files.
This will help us to reduce the amount of drive space we take up and decrease data transfer times Quip compresses next-generation sequencing data with extreme prejudice. It supports input and output in the ...764 days ago
CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
CrowdGO is a protein Gene Ontology predictor using a meta approach, analyzing the pre...ny errors to maarten.reijnders@unil.ch or create an issue. https://journals.plos.org/ploscompbiol/article?id=10.1371/jo...762 days ago