Results for "R"
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PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2928 days ago
Hagfish - assess an assembly through creative use of coverage plots
...is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the...erage plots and aims to assist (amongst others) in quality control of ...uencing experiment. Hagfish requires a reference sequence and a paire...2930 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into oth...ng and graphic manipulation pipelines for presenting large-scale multi-...at https://bitbucket.org/henryhzhang/rcircos/src2930 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Un...s, MOSAIK can align reads generated by all the major sequenci...riant (SV) discovery, MOSAIK provides explicit support for ha...2930 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2930 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for...orkflows, including those for genomic resequencing, RNA-Seq and Chip-...n particular for those containing insertions or deletions.
2930 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2928 days ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
2929 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pip...January 20th, 2016 - New! Bpipe 0.9.9 released! Download latest, all...Pope B & Oshlack A, Bpipe: A Tool for Running and Managing Bioinfor...2929 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig ap...ome.ucsc.edu/goldenPath/help/bigWig.html View the file 'FOOTER' to see the usage statement f...2929 days ago
