TwinBLAST: When Two Is Better than One
...llable panels. BioPerl (www.bioperl.org) is used to indexraw BLAST reports and Bio::Graphics is used to draw pictograms of the BLASThits. https://github.com/IGS/twinblast https://mr...1762 days ago
1752 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and accurate reference-guided scaffolding of draft genomes. bio...1713 days ago
Gooey: Turn (almost) any Python command line program into a full GUI application with one line
...ooey is via pip pip install Gooey Alternatively, you can install Gooey by cloning the project to your local directory git clone https://github.com/chriskiehl/Gooey.git r...1708 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
...r design that adopts modern FPGA (field-programmable gate array) architectures to further boost the performance of our algorithm. More at https://github.com/CMU-SAFARI/Shouji1704 days ago
1703 days ago
Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax and a host of domain-specific features and optimiza...1685 days ago
1681 days ago
RepeatModeler2: automated genomic discovery of transposable element families
...genome sequences. RepeatModeler2 is available as source code or a containerized package under an open license (https://github.com/Dfam-consortium/RepeatModeler, https://github.com/Dfam-consortium/TETools).1676 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
Miniasm is a great long-read assembly tool: straight-forward, effective and very fast. However, it does not include a polishing step, so its assemblies have a high...1675 days ago