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...ations (CNAs) of chromosomal segments in tumor genomes. However, there is lack of...tural chromosomal aberrations by virtue of the genomic location of CNA-associated...tion of chromosomal CNA-associated breaks by a genome-wide approach, which can be...2213 days ago
- ...ET is a Perl application that presents a new way to study the accessory genome of a given set of organisms...m organization through elements acquired by horizontal gene transfers and not constricted by hierarchical...
2826 days ago
- ...to preprocess the Solexa-reads, map them flexibly to several reference genomes using one of four differen...algorithm. MIRO output is furthermore compatible with software such as genome browsers and miRDeep....
2829 days ago
- ...ons for most BBMap suite programs and depending on the file extension the input/output format is automatically chosen/set. Using BBMap Mapping Nanopore reads BBMap.sh has a len...
2823 days ago
- ...Full documentation on Read the Docs. A set of tools for viral metagenomics. virmet is called with a...database. Other available subcommands so far are fetch download genomes update update viral/...
2823 days ago
- Metagenomics sequencing projects collect sample...e main challenges in analyzing a metagenome is phylogenetic classificat...ication is a useful prerequisite for genome assembly and for analysis o...shorter read lengths than previous technologies. Methods for classifyin...
2823 days ago
Entrez Direct: E-utilities on the UNIX Command Line
...are combined to build multi-step queries. Record retrieval and formatting normally complete the process....EDirect commands and UNIX utilities or scripts to perform actions that cannot be accomplished entirely wit...2814 days ago
- ...ion in read-to-reference or genome-genome alignments is lost f...e-dimensional views of most genome browsers showing only refer...dividual reads (Supplementary Note 1). For example, here we sh...ant candidates (Supplementary Note 3). In addition to SAM and...
2812 days ago
- ...ranscriptomics, metabolomics, metagenomics, and other various next-g...ion sequencing (-omics) fields are known for their production of lar...quirements, programming skills and knowledge have frequently been ba...of extremely large datasets that cannot typically be computed in-mem...
2812 days ago
- Summary: GenomeScope is an open-source web tool to...e the overall characteristics of a genome, including genome size, het...eatures are essential for studying genome evolution, and help to choo...real datasets with a wide range in genome sizes, heterozygosity level...
2405 days ago
