SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-m...1416 days ago
1409 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
RosettaAntibodyDesign (RAbD) is a generalized framework for the design of antibodi...ty, or manipulate function. The framework is based on rigorous bioinformatic analysis and rooted very much on our&n...1382 days ago
1345 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary ste...1329 days ago
vsFilt: A tool to improve virtual screening by structural filtration of docking poses
The vsFilt is the first open application for post-docking structural filtration, availa...re web-based and can be operated on-line using the built-in HTML5 interactive analysis tools, or can be downloaded f...1316 days ago
DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms using data from a single locus (a multiple sequence aligned -MSA data), or from several loci (a Multiple-MS...1315 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Contro...lacking a single TF in a particular neuronal subtype 4) Single cell RNAseq analysis of neurons divided by Immedia...1315 days ago
Applied Computational Genomics Course at UU: Spring 2020
This course will provide a comprehensive introduction to fu...ental concepts and experimental approaches in the analysis and interpretation of experim...n, structural variation, and ChIP-seq and RNA-seq analysis. Students will learn and appl...1288 days ago
1284 days ago