1404 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
...design to redesigns that improve binding affinity, optimize stability, or manipulate function. The framework is based on rigorous bioinformatic analysis and rooted very much on our&n...1376 days ago
1340 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary s...1324 days ago
vsFilt: A tool to improve virtual screening by structural filtration of docking poses
...libraries of up to 150’000 docked ligand poses. The results are web-based and can be operated on-line using the built-in HTML5 interactive analysis tools, or can be downloaded f...1310 days ago
DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms using data from a single locus (a multiple sequence aligned -MSA data), or from several lo...1310 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...ong PAM50 designations 3) Whole brain samples from WT mice or mice lacking a single TF in a particular neuronal subtype 4) Single cell RNAseq analysis of neurons divided by Immedia...1309 days ago
Applied Computational Genomics Course at UU: Spring 2020
...ntroduction to fundamental concepts and experimental approaches in the analysis and interpretation of experim...n of genetic variation, structural variation, and ChIP-seq and RNA-seq analysis. Students will learn and appl...1282 days ago
1278 days ago
Genomic Open-source Breeding informatics initiative
To build open-source genomic data management and analysis tools to enable breeders to implement genomic and marker-assisted selection as part of their routine breeding programs. To tr...1268 days ago